If I understand you correctly you are passing 100 individual meshes into the analyser. As most of the analysis rely on information about neighboring faces of the mesh it does not do well across separate meshes. Without knowing the details of your problem the best I can suggest is to join your meshes into a single mesh before analysing.
I have a list of 100 smart meshes but the smart form analyzer is only displaying the first surfaces colors? when I return the smart meshes to meshes though they are all displayed so i know the data is making it through but the analysis is not fully functioning. Any thoughts? Thanks